PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof002553
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family HSF
Protein Properties Length: 290aa    MW: 32621.5 Da    PI: 5.8125
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-130519PU_refplantGDBView CDS
gnl|UG|Sof#S17393723PU_unrefUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind82.46.5e-2627125103
                   SSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  25 gnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                   gnsfvv+d++ +a  +Lp++Fkh nfaSF+RQLn+YgF+kv+ ++         weF+++sF +g+k+ll++ikr++ +
     Sof002553   2 GNSFVVWDPQALAAGILPRFFKHANFASFIRQLNIYGFRKVNPDR---------WEFANESFLAGQKHLLKNIKRRRAS 71 
                   79****************************************999.........*********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.9E-27168IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.6E-22268IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.5E-22268IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.2E-25268IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-81729IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043401842IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-83042IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
XGNSFVVWDP QALAAGILPR FFKHANFASF IRQLNIYGFR KVNPDRWEFA NESFLAGQKH  60
LLKNIKRRRA SKPPMEAQPR KCASACLGPP KDPSEVESLK RDRAALRAEV ITLRQQYSIC  120
KSQLVALEER ILNNEKNQQR AIAFFTKVLS NPAFVQQVLL NYAKEKELRG ASKRQRLMEN  180
EEQWHGDLPP RSSTEAAFAT VAAGVSAGSS DGGITAKQEP GPEVNGQEME GIWYDVWDEL  240
DAIPGAEMDR READKAVAGF DVEDLSGRPC GWDDDCSYLA EPMQFVEHYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-1627143123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16167LKNIKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.99390.0bud| inflorescence| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455822.10.0hypothetical protein SORBIDRAFT_03g025770
SwissprotQ657C01e-129HFA6B_ORYSJ; Heat stress transcription factor A-6a
TrEMBLC5XNS00.0C5XNS0_SORBI; Putative uncharacterized protein Sb03g025770
STRINGSb03g025770.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-57heat shock transcription factor A2